PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077981001
Common NameGSBRNA2T00077981001, LOC106349402
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 336aa    MW: 38341.5 Da    PI: 6.2652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077981001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14131177354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  GSBRNA2T00077981001 131 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 177
                          79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-4131180No hitNo description
PfamPF000101.1E-11131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14132187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DQFLLHLHPQ NHPWSSLPSF DPTHFPSNPT RYPDPVHYFN  60
KRASSSSSFD YTDGFVSPPM DNHHHQNHLR ILSEALGPIM RRGSSFGFDG EDMGKMSAQE  120
VMDAKALAAS KSHSEAERRR RERINTHLAK LRSILPNTTK TDKASLLAEV IQHMKELKRQ  180
TSLVTETCQV PTESDDLTVD STYNDEEGNL VIRASFCCGD RTDLIHDVIN ALKSLHLRTL  240
KAEIATVGGR VKNVLFLSRD DHEDDGFEYR NDALEHDDEE KRYNRVSSIE EALKAVIEKC  300
VNNNDENNDN NNLEKSSSGS IKRQRTSKMA NRFYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.240330.0vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077981001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324480.0AC232448.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644810.10.0PREDICTED: transcription factor AIG1-like
RefseqXP_009152118.10.0PREDICTED: transcription factor AIG1
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLA0A078FGN00.0A0A078FGN0_BRANA; BnaA06g33430D protein
STRINGBra026510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.11e-180basic helix-loop-helix 32
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]